ISB-CGC

Cancer Gateway in the Cloud

Access, Explore and Analyze Large-Scale Cancer Data Through the Google Cloud

Data Browsers

BigQuery Table Search

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Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data Commons and other sources. Jump directly to a table to perform discovery and computation via SQL.

Cancer Data File Browser

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Explore a comprehensive selection of cancer related data files in Google Cloud Storage Buckets, such as raw sequencing, cancer nucleotide variation, pathology or radiology images.

Chromosomal Aberrations & Gene Fusions DB

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Browse the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer which relates cytogenetic changes, in particular gene fusions, to tumor characteristics.

Resources

Cohort Builder / Data Explorer

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A web interface to build cohorts based on clinical demographics and molecular filters. Compare patient cohorts with various exploration tools including IGV viewer, image viewers, and analytical visualization.

Pipelines and APIs

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Learn more about how to access and analyze cancer data through programmatic interfaces including Google Cloud virtual machines and APIs.

Notebooks

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A collection of notebooks written in R and Python, to serve as both tutorials or analysis tools for a range of users; includes reproductions of Regulome Explorer functionality.

Controlled Access Data

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Sign in to access controlled-access data on the Google Cloud. Authenticated users with proper dbGaP authorization only.
ISB-CGC is a component of the NCI Cancer Research Data Commons and has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN261201400008C and ID/IQ Agreement No. 17X148 under Contract No. HHSN261201500003I.