Video Tutorials

  • Introduction

    This is an overview of the ISB Cancer Genomics Cloud covering the use of the web app, BigQuery, and using the API.

  • How to Sign Up with a Google Account

    This video will show you the steps necessary to sign up and link your google cloud project (GCP) to an ISB-CGC account. This enables you export to BigQuery tables and read and write to cloud buckets, including many other features.

  • How to Build a Cohort

    In this video, we use the cohort builder to generate lists of cases (patients) based on various clinical and molecular features. Cohorts are saved and accessible as a list in the user's 'Saved Cohorts' panel (found in the Dashboard) and is the first step in any downstream analysis.

  • How to Make a Gene List

    As a next step after building cohorts, we generate lists of clinical and molecular variables. These variables are connected to cohorts in the Workbooks, when analysis and plots are generated.

  • Image Viewers

    In this video we cover the new image viewers in the ISB-CGC web app. Starting with a cohort, we show how histology slides can be viewed using caMicroscope and how radiology images can be viewed using the Osimis DICOM viewer(note: now the OHIF viewer)

  • Exporting Cohorts

    Learn how to export your cohorts in four different ways, including BigQuery, comma delimited files, cloud buckets and sharing with collaborators.