ISB-CGC Publications

  1. Sheila M. Reynolds, Michael Miller, Phyliss Lee, et al. The ISB cancer genomics cloud: A flexible cloud-based platform for cancer genomics researchopens a new tab. Cancer Research. 2017. doi: 10.1158/0008-5472.CAN-17-0617.
  2. Kawther Abdilleh, Boris Aguilar, J. Ross Thomson et al. Multi-omics data integration in the Cloud: Analysis of Statistically Significant Associations Between Clinical and Molecular Features in Breast Cancer. 2020. doi: 10.1145/3388440.3414917.
  3. Dondra Bailey, Kawther Abdilleh, Boris Aguilar, et al. Multi-omics characterization of Microtubule-actin cross linking factor 1 (MACF1) using the ISB-Cancer Genomics Cloud. 2020. doi: 10.1145/3388440.3414918.
  4. Kawther Abdilleh, Boris Aguilar, Ronald C. Taylor, et al. Large-scale Cloud-based Inference of Differential Breast Cancer-related Network Gene Between Patient Cohorts. 2020.
  5. Aguilar B, Gibbs DL, Reiss DJ, et al. A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma. 2020.
  6. Gibbs DL, Aguilar B, Thorsson V, Ratushny AV, Shmulevich I. Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer. Frontiers in Genetics. 2021;12:1489. doi:10.3389/fgene.2021.667382.
  7. Boris Aguilar, Kawther Abdilleh, George Acquaah-Mensah. A tale of two cohorts: Transcriptomics and epigenomic analysis in breast cancer. 2021.
  8. Kawther Abdilleh, Boris Aguilar, Ronald C. Taylor, et al. Multi-omics data analysis in the cloud: inference of differential breast cancer-related network hubs between TCGA patient cohorts. 2021. doi: 10.7490/f1000research.1118296.1.
  9. Plaugher D, Aguilar B, Murrugarra D. Uncovering potential interventions for pancreatic cancer patients via mathematical modeling. 2022. doi: 10.1101/2022.01.11.475711.
  10. de Andrade KC, Lee EE, Tookmanian EM, et al. The TP53 Database: transition from the International Agency for Research on Cancer to the US National Cancer Institute. 2022. doi: 10.1038/s41418-022-00976-3.
  11. Tercan B, Qin G, Kim TK, et al. SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery. 2022. doi:10.12688/f1000research.110903.2.
  12. Wang J, Zheng J, Lee E, et al. A cloud-based resource for genome coordinate-based exploration and large-scale analysis of chromosome aberrations and gene fusions in cancer. 2023. doi:10.1002/gcc.23128.
  13. Torcivia J, Abdilleh K, Seidl F, et al. Whole Genome Variant Dataset for Enriching Studies across 18 Different Cancers. 2023. doi:10.3390/onco2020009.
  14. Thomson R. How to run statistics inside BigQuery. 2023.

Citations

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  2. Barahuie F, Dorniani D, Saifullah B, et al Tannic acid chitosan iron oxide nanocomposite for cervical cancer treatment.. Inorganic Chemistry Communications. 2024. doi:10.1016/j.inoche.2024.112160.
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  30. Duncan JL, Bloomfield M, Swami N, Cimini D, Davalos RV. High-Frequency Dielectrophoresis Reveals That Distinct Bio-Electric Signatures of Colorectal Cancer Cells Depend on Ploidy and Nuclear Volume. Micromachines. 2023. doi:10.3390/mi14091723.
  31. Hoang V, Hung LH, Perez D, et al. Container Profiler: Profiling resource utilization of containerized big data pipelines. GigaScience. 2023. doi:10.1093/gigascience/giad069.
  32. Jamur V, Lisboa M, De Azambuja A, Brofman P. Case report: CD8 positive T-cell Prolymphocytic Leukemia presenting complex karyotype with a rare chromosomal abnormality der(2)t(1;2)(q21;q37) and additional signals of the genes MYC, IGH, and TP53. Hematology, Transfusion and Cell Therapy. 2023. 10.1016/j.htct.2023.07.009.
  33. Kent MR, Silvius K, Kucinski J, Calderon D, Kendall GC. Functional Genomics of Novel Rhabdomyosarcoma Fusion-Oncogenes Using Zebrafish. Springer US. 2024. doi:10.1007/978-1-0716-3401-1_2.
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  45. Panagopoulos I, Andersen K, Brunetti M, et al. Genetic Pathways in Peritoneal Mesothelioma Tumorigenesis. Cancer Genomics & Proteomics. 2023. doi:10.21873/cgp.20388.
  46. Panagopoulos I, Andersen K, Wik HS, et al. Acute Undifferentiated Leukemia With a Balanced t(5;10)(q35;p12) Resulting in Fusion of HNRNPH1 With MLLT10. Cancer Genomics & Proteomics. 2023. doi:10.21873/cgp.20387.
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  48. Lanic MD, Guérin R, Wassef M, et al. Detection of salivary gland and sinonasal fusions by a next-generation sequencing based, ligation-dependent, multiplex RT-PCR assay. Histopathology. 2023. doi:10.1111/his.14971.
  49. Lo CS. Functional Assessment on the Differential Effect of Mutant p53-Plakoglobin Interaction in Carcinoma Cells. ERA. 2023. doi:10.7939/r3-b12y-7833.
  50. Ratajczak B, Przybyłowicz-Chalecka A, Czerwińska-Rybak J, et al. The presence of additional cytogenetic aberrations in chronic myeloid leukemia cells at the time of diagnosis or their appearance on tyrosine kinase inhibitor therapy predicts the imatinib treatment failure. Leukemia Research. 2023. doi:10.1016/j.leukres.2023.107349.
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  53. Stružinská I, Hájková N, Hojný J, et al. A comprehensive molecular analysis of 113 primary ovarian clear cell carcinomas reveals common therapeutically significant aberrations. Diagnostic Pathology. 2023. doi:10.1186/s13000-023-01358-0.
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  62. Sadoq BE, Britel M, Bouajaj A, et al. A Review on Antibacterial Activity of Nanoparticles. Biointerface Research in Applied Chemistry. 2023. doi:1.33263/BRIAC135.405.
  63. Sasaki K, Takahashi S, Ouchi K, et al. Different impacts of TP53 mutations on cell cycle-related gene expression among cancer types. Scientific Reports. 2023. doi:10.1038/s41598-023-32092-8.
  64. Striker SS, Wilferd SF, Lewis EM, et al. Systematic integration of protein-affecting mutations, gene fusions, and copy number alterations into a comprehensive somatic mutational profile. Cell Reports Methods. 2023. doi:10.1016/j.crmeth.2023.100442.
  65. Teku G, Nilsson J, Magnusson L, et al. Insertion of the CXXC domain of KMT2A into YAP1: An unusual mechanism behind the formation of a chimeric oncogenic protein. Genes, Chromosomes and Cancer. 2023. doi:10.1002/gcc.23176.
  66. Torrezan GT, Mehdipour P. Women in cancer genetics vol II: 2022. Frontiers Media SA. 2023.
  67. Yan X, Yue T, Winkler DA, et al. Converting Nanotoxicity Data to Information Using Artificial Intelligence and Simulation. Chemical Reviews. 2023. doi:10.1021/acs.chemrev.3c00070.
  68. Yoon SJ, Combs JA, Falzone A, et al. Comprehensive Metabolic Tracing Reveals the Origin and Catabolism of Cysteine in Mammalian Tissues and Tumors. Cancer Research. 2023. doi:10.1158/0008-5472.CAN-22-3000.
  69. Bomben R, Zucchetto A, Pozzo F, et al. TP53 Mutations and Clinical Outcome in Chronic Lymphocytic Leukemia: Is a Threshold Still Needed?. HemaSphere. 2023. doi:10.1097/HS9.0000000000000855.
  70. Charlab R, Racz R. The expanding universe of NUTM1 fusions in pediatric cancer. Clinical and Translational Science. 2023. doi:10.1111/cts.13535.
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  72. Feng R, Yin Y, Wei Y, et al. Mutant p53 activates hnRNPA2B1-AGAP1-mediated exosome formation to promote esophageal squamous cell carcinoma progression. Cancer Letters. 2023. doi:10.1016/j.canlet.2023.216154.
  73. Huang Q, Li F, Ji M, Lin L, Hu C. Evaluating the prognostic significance of p53 and TP53 mutations in HPV-negative hypopharyngeal carcinoma patients: a 5-year follow-up retrospective study. BMC Cancer. 2023. doi:10.1186/s12885-023-10775-9.
  74. Kannan M. Artificial Intelligence in Cancer Researches. International Journal of Trends in OncoScience. 2023.
  75. Kosik P, Skorvaga M, Belyaev I. Preleukemic Fusion Genes Induced via Ionizing Radiation. International Journal of Molecular Sciences b. 2023. doi:10.3390/ijms24076580.
  76. Luebeck J, Ng AWT, Galipeau PC, et al. Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus. Nature. 2023. doi:10.1038/s41586-023-05937-5.
  77. Omran M. Heritable TP53-Related Cancer Syndrome in Sweden : Characterisation of Genotype-Phenotype Correlation and Surveillance. Inst för onkologi-patologi / Dept of Oncology-Pathology. 2023.
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  96. Marco-Brualla J, de Miguel D, Martínez-Lostao L, Anel A. DR5 Up-Regulation Induced by Dichloroacetate Sensitizes Tumor Cells to Lipid Nanoparticles Decorated with TRAIL. Journal of Clinical Medicine. 2023. doi:10.3390/jcm12020608.
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  102. Abad-Carratalà G, Blanco-Silvestre M, Sánchez-Llopis A, et al Two Clinical Cases of Li-Fraumeni Syndrome and Prostate Cancer: Genetic Counseling and Clinical-Surgical Management. Clinical Genitourinary Cancer. 2022. doi:10.1016/j.clgc.2022.06.002.
  103. Closa A, Reixachs-Sole M, Fuentes-Fayos AC, et al. A convergent malignant phenotype in B-cell acute lymphoblastic leukemia involving the splicing factor SRRM1. NAR Cancer. 2022. doi:10.1093/narcan/zcac041.
  104. Colombo C, Pogliaghi G, Tosi D, et al. Thyroid cancer harboring PTEN and TP53 mutations: A peculiar molecular and clinical case report. Front Oncol.. 2022. doi:10.3389/fonc.2022.949098.
  105. Garsed, DW, Pandey, A, Fereday, S et al. The genomic and immune landscape of long-term survivors of high-grade serous ovarian cancer. Nat Genet. 2022. doi:10.1038/s41588-022-01230-9.
  106. Lopez de Lapuente Portilla A, Ekdahl L, Cafaro C, et al. Genome-wide association study on 13 167 individuals identifies regulators of blood CD34+cell levels. Blood. 2022. doi:10.1182/blood.2021013220.
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